I have 3 years old web site, has about 10.000 pages indexed in google. Today site:mysite.com shows nothing (all datacenters) link:mysite.com shows url's as normal pr is 3 (all datacenters) still in google directory but shows pr 4 ( never been pr 4 before) google webmaster tools say; I haven't changed anything in the site for about 6 months except publishing new unique content. There is no outgoing links except wikipedia I am really confused, banned or not?
That's very odd - give it a day and see if the pages come back. Google has been performing some very odd dance steps over the last 2 months.