Only a few of my No-Follow backlinks show up on Google Webmaster Tools ... Are these being counted as "do-follow" somehow? Or, is Google just throwing people off.... telling you about the links... but not giving any juice for them
It won't be consider any of your nofollow links, It just showing how much over all links your website is having.
it can't be that would be soooooo wrong of google to even follow a nofollow link, especially when they are the ones that invented the whole concept for something not to be followed by their bots