I am looking for any reference that explains what hooks, filters and actions are available for someone who wants to write their own WordPress Plugin.
http://codex.wordpress.org/ Google wordpress plugin tutorials. Buy an ebook of wordpress plugin development
Actually from JAY6390's link you can find this : http://adambrown.info/p/wp_hooks/version/2.9 That's all 1142 hooks for WP 2.9.