Hoping someone could advise if this could negatively affect our rankings: All our incoming links point to www.widget.com However if you type in the main url of our website the browser displays the url www.widget.com/home/index.php Could this negatively affect us? Thanks in advance.
according to my knowledge it is same. No negative effects. But better keep your index file in root, rather than under home folder. like widget.com/index.php
If it's done correctly it wont affect your ranking at all, you need to make sure it's redirected using L301 if it's hosted on linux environment (moved permanently) so it will pass the old url value to the new url.