I have 805 keywords and have yet (i have tried 3 days in a row) to be able to check them all using the check all button. it checks 100-200 then stops and i then cannot check any more. it gives me the 1000+ Google Keyword error. any thoughts about what i can to complete the process?
You might reduce the depth of checking to, say, 10 or 20. You may be able to increase it later after successfully running your entire list.
Set it to only check 10 positions deep. Check #22 on the FAQ: http://www.digitalpoint.com/tools/keywords/faq.html