--Hi, i'm biologist and i try to make a fast method or a function in javascript to automatic colorize each bases of my DNA sequence, but i'm not a specialist and i need somebody help. For example i 've a text sequence not formated(single color) as: ATGTCTGATGCACCACTTCTCGGTTATGTGGAGAGGCAGGGCAAGCTCAGCTGTATTGTAGCTGGACTAA AGGGGAAGCTCAGCAATTCGGAGTTAANNGTTAATCAAGCCAGACATTATCTGCAAAGCAATTCCGAGAG GTGGAAAAACAACCACAACAAAAATAACCCAGGATCTCATTACTCTTGTCAGCTAAACGCTTTAAAAGAT TCTTGGAAA*CCAGTCACAAGGACGGCAGAGTTTCTGATGACATCAAGAAGGTGGTGAAGCAGGCATCCA AGGGCCCACTAAAGGGCATCCTGGGCTACACTGAGGACCAGGTTGTCTCCTGTGACTTCAACAGCAACTC CCACTCTTCCACCTTTGATGCTGGGG*TGGCATTGCTCTCAATGACAACTTTGTAAAGCTCATTTCCTGG TATGACAATGAATACGGCTACAGCAACAGGGTGGTGGACCTCATGGCTTACATGGCCTCCAAGGAGTAA the javascript function must color: - all letters A in blue, - all letters T in red, - all letters G in green, - all letters C in purple, and all others letters stay unchanged (black). the formatted sequence need to be loaded as soon as the page is opened. thank you for your help. mslider
example here: http://www.jsfiddle.net/TUBD7/2/ var highlightDNA = function(targetElement) { var mapper = { A: "blue", T: "red", G: "green", C: "purple" }, dna = targetElement.innerHTML; for(var key in mapper) { dna = dna.replace(new RegExp(key,"g"), "<span class='"+mapper[key]+"'>"+key+"</span>"); } targetElement.innerHTML = dna; }; // need to pass it the element that contains the sequence: highlightDNA(document.getElementById("sequence")); Code (javascript): make sure you get the CSS as well: #sequence { font-family: courier; font-size: 12px; font-weight: bold; } span.blue { color: blue; } span.red { color: red; } span.green { color: green; } span.purple { color: purple; } HTML: good luck