I am also using backlinkwatch and its really effective tool and its a friendly user tool. You can also use yahoo site explorer
Try http://www.linkdiagnosis.com/ You can use it only on Firefox with addon. It will show you number of backlinks, indexed pages, unique anchors used, missing links, dofollow, nofollow, rss links, etc. Hope this will help your backlinks analysis.
That's what I'm looking for I think. Thanks. I try backlinkwatch & Yahoo site explorer but don't see where it shows which links are do follow.